Index

_

_config_props_ (engine.neuron.analog.oscillator.OscillatorNeuron attribute) (engine.neuron.spiking.IZ.IZNeuron attribute) (engine.neuron.spiking.LIF.LIFNeuron attribute) (engine.synapse.STDP.STDPSynapse attribute) (engine.synapse.Synapse attribute)

_extensible_props_ (engine.ensemble.Ensemble attribute)

A

access() (data.Data method) add_data_hook() (engine.network.Network method) add_descriptors() (data.Metadata method) add_ensembles() (engine.network.Network method)

add_synapses() (engine.network.Network method) aggregate() (engine.neuron.Neuron static method) AnalogEnsemble (class in engine.ensemble.analog) AnalogNeuron (class in engine.neuron.analog) AxisDescriptor (class in data)

B

backward() (engine.network.Network method)

BalancedSampler (class in data.sampling)

C

close_file() (utils.loggable.NixLogReader method) (utils.loggable.NixLogWriter method) Component (class in engine.component) compression (utils.loggable.NixLogWriter attribute) config_data (utils.loggable.NixLogWriter attribute)

configure() (engine.component.Component method) connect() (engine.synapse.Synapse method) count_combinations() (utils.sweep.Sweep method) create_block() (utils.loggable.NixLogWriter method) create_file() (utils.loggable.NixLogWriter method) CV (class in data.sampling)

D

data module Data (class in data) data.external module data.external.drift module

data.sampling module DataAccumulatorHook (class in utils.io) draw() (model.Model method) DriftDataset (class in data.external.drift) DT (in module utils.constants) dump_loggable() (in module utils.loggable)

E

engine module engine.component module engine.ensemble module engine.ensemble.analog module engine.ensemble.spiking module engine.network module engine.neuron module engine.neuron.analog module

engine.neuron.analog.oscillator module engine.neuron.spiking module engine.neuron.spiking.IZ module engine.neuron.spiking.LIF module engine.synapse module engine.synapse.STDP module Ensemble (class in engine.ensemble) ensure_dir() (in module utils.io) extend_input_current() (in module utils.signals) extract_combinations() (utils.sweep.Sweep static method)

F

filename (utils.loggable.NixLogReader attribute) (utils.loggable.NixLogWriter attribute) fit() (model.Model method) fix_random_seed() (in module utils.seed) flatten() (in module utils.io) forward() (engine.component.Component method) (engine.ensemble.Ensemble method) (engine.network.Network method) (engine.neuron.analog.AnalogNeuron method) (engine.neuron.analog.oscillator.OscillatorNeuron method) (engine.neuron.Neuron method) (engine.neuron.spiking.IZ.IZNeuron method) (engine.neuron.spiking.LIF.LIFNeuron method) (engine.neuron.spiking.SpikingNeuron method) (engine.synapse.STDP.STDPSynapse method) (engine.synapse.Synapse method) (utils.io.DataAccumulatorHook method)

G

generate_combinations() (utils.sweep.Sweep method) get_ensembles() (engine.network.Network method) get_experiment_names() (utils.loggable.NixLogReader method) get_experiment_property_data() (utils.loggable.NixLogReader method) get_experiment_property_paths() (utils.loggable.NixLogReader method)

get_loggable_properties() (in module utils.loggable) get_metadata() (data.Data method) get_property_arrays() (utils.loggable.NixLogWriter method) get_synapses() (engine.network.Network method) git_hash (utils.loggable.NixLogWriter attribute)

H

HDFData (class in utils.tensorboard) heatmap() (utils.tensorboard.TensorboardWriter method) heterogenize() (engine.component.Component method) (engine.ensemble.analog.OscillatorEnsemble method) (engine.ensemble.spiking.IZEnsemble method) (engine.ensemble.spiking.LIFEnsemble method) (engine.synapse.Synapse method) (utils.sweep.Sweep method)

hparam() (utils.tensorboard.TensorboardWriter method)

I

initialize() (pipeline.simple.SimpleSimulator method) initialize_hdf() (utils.io.DataAccumulatorHook method) inject() (engine.neuron.Neuron method) integrate() (engine.neuron.Neuron method) (engine.neuron.spiking.IZ.IZNeuron method)

Integrator (class in utils.integration) IZEnsemble (class in engine.ensemble.spiking) IZNeuron (class in engine.neuron.spiking.IZ)

L

LIFEnsemble (class in engine.ensemble.spiking) LIFNeuron (class in engine.neuron.spiking.LIF) load() (data.Data method) (data.external.drift.DriftDataset method) (model.Model method) load_save_get_loggable_properties() (in module utils.loggable) load_yaml() (in module utils.io)

log() (utils.loggable.NixLogWriter static method) log_settings() (in module utils.io) log_tensor_board() (in module utils.loggable) Loggable (class in utils.loggable) loggable_children (utils.loggable.Loggable property) loggable_props (utils.loggable.Loggable property) loggable_state() (engine.component.Component method)

M

Metadata (class in data) metadata (utils.loggable.NixLogWriter attribute) model module Model (class in model) modify() (data.Data method) module data data.external data.external.drift data.sampling engine engine.component engine.ensemble engine.ensemble.analog engine.ensemble.spiking engine.network engine.neuron engine.neuron.analog engine.neuron.analog.oscillator engine.neuron.spiking engine.neuron.spiking.IZ engine.neuron.spiking.LIF engine.synapse engine.synapse.STDP model pipeline pipeline.simple utils utils.constants utils.integration utils.io utils.loggable utils.plotting utils.seed utils.signals utils.sweep utils.tensorboard

N

Network (class in engine.network) Neuron (class in engine.neuron) nix_file (utils.loggable.NixLogReader attribute) (utils.loggable.NixLogWriter attribute)

NixLogReader (class in utils.loggable) NixLogWriter (class in utils.loggable) num_units (engine.ensemble.Ensemble property) (engine.neuron.Neuron property)

O

open_file() (utils.loggable.NixLogReader method)

OscillatorEnsemble (class in engine.ensemble.analog) OscillatorNeuron (class in engine.neuron.analog.oscillator)

P

pipeline module Pipeline (class in pipeline) pipeline.simple module

PLOT_BACKEND (in module utils.constants) plot_tensorboard() (in module utils.io) predict() (model.Model method)

Q

queue_input() (engine.synapse.Synapse method)

R

raster() (utils.tensorboard.TensorboardWriter method) read() (utils.tensorboard.HDFData method) read_loggable_from_file() (in module utils.loggable) read_loggable_from_object() (in module utils.loggable)

register_waveforms() (engine.neuron.analog.oscillator.OscillatorNeuron method) run() (pipeline.Pipeline method) (pipeline.simple.SimpleSimulator method) RungeKutta (class in utils.integration)

S

sample() (data.Data method) save() (data.Data method) (data.external.drift.DriftDataset method) (model.Model method) save_yaml() (in module utils.io) scan() (data.Data method) SEED (in module utils.constants) select() (data.external.drift.DriftDataset method) set_fit_request() (model.Model method) set_learning() (engine.synapse.Synapse method)

set_predict_request() (model.Model method) set_weights() (engine.synapse.Synapse method) similarity() (model.Model method) SimpleSimulator (class in pipeline.simple) spike_raster() (in module utils.plotting) SpikingNeuron (class in engine.neuron.spiking) STDPSynapse (class in engine.synapse.STDP) Sweep (class in utils.sweep) Synapse (class in engine.synapse) SYNAPSE_SPLITTERS (in module utils.constants)

T

TensorboardWriter (class in utils.tensorboard) TIME_FORMAT (in module utils.constants)

to_dataframe() (data.Metadata method) trace() (utils.tensorboard.TensorboardWriter method) trim() (data.Data method)

U

update_loggable_from_object() (in module utils.loggable) update_weights() (engine.synapse.STDP.STDPSynapse method) (engine.synapse.Synapse method) utils module utils.constants module utils.integration module utils.io module

utils.loggable module utils.plotting module utils.seed module utils.signals module utils.sweep module utils.tensorboard module

W

Wave (class in utils.signals)

WaveIterable (class in utils.signals) write() (utils.tensorboard.TensorboardWriter method)